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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_8327331_8328577_R

Intron Information:

Intron Rank:
40
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8327331 - 8328577
Intron Length:
1247

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCCCGATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTACAT
U12 Branch Point Sequence:
ATTACATTTAGT
Flanking Amino Acid:
LIGNPSILLLDEPSSGMDPN
Intron Amino Acid Position:
1984

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
0.9
78.6
30
Major BPS
73.9
0.59
1
81
30.2
Major PPT
72.6
0.51
0.9
69.7
31.3
Minor 5ss
29.8
-2.3
3
37.3
41.2
Minor BPS
47.9
-0
2.2
72.67
43.5

Associated Gene:

Gene:
ABCA12
Ensembl Gene ID:
ENSAPLG00000014859
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015556
8324130 - 8405805
81676