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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_8329691_8330839_R

Intron Information:

Intron Rank:
37
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8329691 - 8330839
Intron Length:
1149

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCCAG
5'SS Class:
strong_major
3'SS Sequence:
TCCCACAACCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTACAT
U12 Branch Point Sequence:
TTTCCCACAACC
Flanking Amino Acid:
NISLGIPAGECFGLLGVNGA
Intron Amino Acid Position:
1854

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
68.8
43.8
Major BPS
65
0.37
1.3
75
40
Major PPT
60.4
0.24
0.9
51
36.7
Minor 5ss
37.2
-1.4
3
46.7
48.6
Minor BPS
61
0.33
1.9
78.02
37.1

Associated Gene:

Gene:
ABCA12
Ensembl Gene ID:
ENSAPLG00000014859
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015556
8324130 - 8405805
81676