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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_8335972_8336451_R

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8335972 - 8336451
Intron Length:
480

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGAAGA
5'SS Class:
major
3'SS Sequence:
GCTCTCTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATACAT
U12 Branch Point Sequence:
TTTGACTCACCA
Flanking Amino Acid:
YPGGQSQEQVMLNSLLDIIV
Intron Amino Acid Position:
1565

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
73.7
36.8
Major BPS
74.9
0.62
1
81.3
29.9
Major PPT
74.1
0.54
0.8
65.3
36.2
Minor 5ss
35.3
-1.7
3
45.1
42.8
Minor BPS
48.6
-0.1
2.1
68.54
43.7

Associated Gene:

Gene:
ABCA12
Ensembl Gene ID:
ENSAPLG00000014859
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015556
8324130 - 8405805
81676