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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_8344812_8346929_R

Intron Information:

Intron Rank:
27
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
8344812 - 8346929
Intron Length:
2118

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CCTCAGTATAGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
TATGCCTCAGTA
Flanking Amino Acid:
YGTSDQADFFGTSEENVFIF
Intron Amino Acid Position:
1400

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
74.9
35.3
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
48.4
-0
1.7
52.8
40.5
Minor 5ss
29.4
-2.4
3.1
33.3
41.7
Minor BPS
50.2
0
1.9
64.89
41.7

Associated Gene:

Gene:
ABCA12
Ensembl Gene ID:
ENSAPLG00000014859
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015556
8324130 - 8405805
81676