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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_8349128_8351700_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
8349128 - 8351700
Intron Length:
2573

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTTTGGTGA
5'SS Class:
weak_major
3'SS Sequence:
TCTCGTGGAAGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GTAGTTTTAAAT
Flanking Amino Acid:
CCGSPFYLKETCSLSPFCPE
Intron Amino Acid Position:
188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
52
0.05
1.4
51.4
42
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
46
-0.2
1.7
49.5
42.8
Minor 5ss
39.9
-1.1
3
46.6
42.6
Minor BPS
57.3
0.31
1.5
70.2
40.7

Associated Gene:

Gene:
ABCA12
Ensembl Gene ID:
ENSAPLG00000014859
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041544
8349079 - 8353346
4268