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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_8349922_8351611_R

Intron Information:

Intron Rank:
24
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
8349922 - 8351611
Intron Length:
1690

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGTGATGT
5'SS Class:
major
3'SS Sequence:
TATGATAGAGGAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATATGAT
U12 Branch Point Sequence:
TTTTTCAGAATA
Flanking Amino Acid:
TKKKPHLKINCDTAAVTSLI
Intron Amino Acid Position:
1200

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.2
0.41
1.1
63.2
37.5
Major BPS
75.8
0.64
1
65.8
41
Major PPT
44.5
-0.3
1.7
45
45.1
Minor 5ss
42.7
-0.8
3.1
59.9
45
Minor BPS
61
0.34
1.7
76.95
33.6

Associated Gene:

Gene:
ABCA12
Ensembl Gene ID:
ENSAPLG00000014859
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015556
8324130 - 8405805
81676