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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_8353291_8354845_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8353291 - 8354845
Intron Length:
1555

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTACGTGTC
5'SS Class:
major
3'SS Sequence:
TTTTCTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTTTTTAACT
Flanking Amino Acid:
GHNGAGKTTTISILTGLFPT
Intron Amino Acid Position:
1001

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1.1
72.8
37
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
89.9
0.9
0.7
88.4
28.7
Minor 5ss
38.6
-1.3
3.6
56.3
41.8
Minor BPS
88.9
1.3
0.8
99.22
22

Associated Gene:

Gene:
ABCA12
Ensembl Gene ID:
ENSAPLG00000014859
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015556
8324130 - 8405805
81676