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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_8356730_8356829_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8356730 - 8356829
Intron Length:
100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TATTTCTAAATT
Flanking Amino Acid:
YIARYEAQGIGLQWDNMYKS
Intron Amino Acid Position:
860

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.8
79.4
29.7
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
91.4
0.93
0.6
87.5
22.7
Minor 5ss
46.6
-0.4
2.4
59.3
45.3
Minor BPS
69.8
0.7
1.6
84.43
36.6

Associated Gene:

Gene:
ABCA12
Ensembl Gene ID:
ENSAPLG00000014859
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015556
8324130 - 8405805
81676