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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_8356900_8357745_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8356900 - 8357745
Intron Length:
846

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
GTTTATTCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTGTTTTCAATT
Flanking Amino Acid:
HLSFSVKSLLSLLSPTAFSY
Intron Amino Acid Position:
837

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.2
29.3
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
79.9
0.67
0.8
77.5
36.5
Minor 5ss
43
-0.8
2.8
56.6
41.9
Minor BPS
64.6
0.54
1.5
79.17
37.8

Associated Gene:

Gene:
ABCA12
Ensembl Gene ID:
ENSAPLG00000014859
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015556
8324130 - 8405805
81676