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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_8359505_8362066_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8359505 - 8362066
Intron Length:
2562

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTGCCTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TTGCCTTTTACA
Flanking Amino Acid:
GMPYPCYNKDMFLTSVTYSL
Intron Amino Acid Position:
688

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
1
80.8
34.4
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
85.1
0.79
0.8
79.7
32.4
Minor 5ss
46.2
-0.4
2.8
62.9
41.8
Minor BPS
63
0.4
1.6
72.64
39.2

Associated Gene:

Gene:
ABCA12
Ensembl Gene ID:
ENSAPLG00000014859
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015556
8324130 - 8405805
81676