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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_8364005_8365381_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8364005 - 8365381
Intron Length:
1377

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTGTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTTCTTTGTTT
Flanking Amino Acid:
VELLSQINELDDIRLELQNN
Intron Amino Acid Position:
526

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
78.8
38.3
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
85.2
0.79
0.9
76.9
42.1
Minor 5ss
41.5
-0.9
2.9
50
46.3
Minor BPS
49.4
0.03
3.5
86.34
34.1

Associated Gene:

Gene:
ABCA12
Ensembl Gene ID:
ENSAPLG00000014859
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015556
8324130 - 8405805
81676