About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_8433338_8434436_F


Intron Information:

Intron Rank:
3

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
8433338 - 8434436

Intron Length:
1099

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CTG|GTATGTTGT

5'SS Class:
strong_major

3'SS Sequence:
GTTTTTTAACTAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTTTAAT

U12 Branch Point Sequence:
TGTTTTTTAACT

Flanking Amino Acid:
VKTLHPAVHAGILARNIPED

Intron Amino Acid Position:
204

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
80.5
0.72
1
73.2
38.4

Major BPS
99.5
1.23
0.5
98.2
4.2

Major PPT
72.3
0.5
1
67.7
42.7

Minor 5ss
48.1
-0.2
2.5
64.1
42.5

Minor BPS
83
1.11
1
92.13
30.1

Associated Gene:

Gene:
ATIC

Ensembl Gene ID:

Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

8430877 - 8451892
21016