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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_8434504_8436895_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8434504 - 8436895
Intron Length:
2392

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATACA
5'SS Class:
strong_major
3'SS Sequence:
CTTTGATTCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
CTCCCTTTGATT
Flanking Amino Acid:
DMNKQDFSLVRVVVCNLYPF
Intron Amino Acid Position:
226

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
83.1
28.6
Major BPS
84
0.85
0.9
75
39.9
Major PPT
75.7
0.58
0.8
73.7
35.9
Minor 5ss
35.4
-1.7
2.7
43.5
43.6
Minor BPS
62.2
0.46
1.3
71.72
40.1

Associated Gene:

Gene:
ATIC
Ensembl Gene ID:
ENSAPLG00000014306
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014981
8430877 - 8451892
21016