About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_8439120_8439246_F


Intron Information:

Intron Rank:
6

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
8439120 - 8439246

Intron Length:
127

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AAG|GTCGGTCGC

5'SS Class:
major

3'SS Sequence:
GTTCTGTCCCCAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTGACAA

U12 Branch Point Sequence:
TGTCAGTTGACA

Flanking Amino Acid:
METRRHLALKAFTHTAQYDA

Intron Amino Acid Position:
307

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
68.2
0.43
1.4
59.6
41.6

Major BPS
58.4
0.21
1.2
67
39.8

Major PPT
74.3
0.55
0.9
65.4
41.1

Minor 5ss
28.6
-2.5
2.9
36.1
40.7

Minor BPS
48.2
-0.1
2.2
66.08
39.8

Associated Gene:

Gene:
ATIC

Ensembl Gene ID:

Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

8430877 - 8451892
21016