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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_8440428_8440567_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8440428 - 8440567
Intron Length:
140

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGTGG
5'SS Class:
major
3'SS Sequence:
TGTTTCCCACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGCGAG
U12 Branch Point Sequence:
TGTTTCCCACTA
Flanking Amino Acid:
AASFKHVSPAGAAVGIPLSD
Intron Amino Acid Position:
401

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1.1
61.3
45.8
Major BPS
36.9
-0.8
1.7
29.6
44.5
Major PPT
70.9
0.47
0.9
64.5
37.8
Minor 5ss
34.7
-1.7
3.5
46.4
49
Minor BPS
44.9
-0.3
2
60.6
39.7

Associated Gene:

Gene:
ATIC
Ensembl Gene ID:
ENSAPLG00000014306
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014981
8430877 - 8451892
21016