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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_8440676_8441912_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8440676 - 8441912
Intron Length:
1237

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAGGC
5'SS Class:
strong_major
3'SS Sequence:
TGTGATTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTGAT
U12 Branch Point Sequence:
GTTACTAGAAGA
Flanking Amino Acid:
PLASAYARSRGADRMSSFGD
Intron Amino Acid Position:
437

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
69.4
35.7
Major BPS
72.4
0.56
1.2
63.1
44.4
Major PPT
79.7
0.67
0.9
73.2
41.7
Minor 5ss
25.3
-2.8
3.2
32.7
42.3
Minor BPS
44.8
-0.3
2
58.91
40.3

Associated Gene:

Gene:
ATIC
Ensembl Gene ID:
ENSAPLG00000014306
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014981
8430877 - 8451892
21016