About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_8441999_8442868_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8441999 - 8442868
Intron Length:
870

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
CTGTGTGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTCACATGGACA
Flanking Amino Acid:
VPTAKIISREVSDGVVAPGY
Intron Amino Acid Position:
466

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
1.1
81.4
27.6
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
75.1
0.56
1
68.6
42
Minor 5ss
35.9
-1.6
2.6
41.2
45.2
Minor BPS
49.4
-0
1.8
65.49
40.4

Associated Gene:

Gene:
ATIC
Ensembl Gene ID:
ENSAPLG00000014306
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014981
8430877 - 8451892
21016