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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_8444256_8445177_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8444256 - 8445177
Intron Length:
922

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTGAGTGTC
5'SS Class:
major
3'SS Sequence:
CGTTTCATTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TGGCGTTTCATT
Flanking Amino Acid:
FKNIVTKNKNLPESAVRDLI
Intron Amino Acid Position:
539

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.2
75.7
34.4
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
81.2
0.7
0.9
77.9
35.1
Minor 5ss
33.2
-1.9
3.3
42.7
38
Minor BPS
44.7
-0.3
2.1
61.33
43.3

Associated Gene:

Gene:
ATIC
Ensembl Gene ID:
ENSAPLG00000014306
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014981
8430877 - 8451892
21016