Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_8457184_8457434_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8457184 - 8457434

Intron Length:

251

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGCAGG

5'SS Class:

strong_major

3'SS Sequence:

CTCTGTTCCCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTCTAAC

U12 Branch Point Sequence:

TGAGGTCTAACT

Flanking Amino Acid:

CSCTCYGGQQGWRCDNCRRP

Intron Amino Acid Position:

2287

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.9

72.7

44.5

Major BPS

66.8

0.42

1.2

69.6

35.5

Major PPT

72.4

0.51

0.8

65.1

36.3

Minor 5ss

38.8

-1.3

2.8

48.8

Minor BPS

46.2

-0.2

2.1

44.5

Associated Gene:

Gene:

FN1

Ensembl Gene ID:

ENSAPLG00000012652

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013302

8456465 - 8507187

50723