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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_8458241_8459432_R

Intron Information:

Intron Rank:
42
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8458241 - 8459432
Intron Length:
1192

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTGAGTAGC
5'SS Class:
major
3'SS Sequence:
CTGCCTTCTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
TCCTGCTTATGT
Flanking Amino Acid:
GSGHFRCDSSKWCHDNGVNY
Intron Amino Acid Position:
2209

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1
67.7
37.5
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
77.7
0.62
0.8
69.1
37
Minor 5ss
32.5
-2
2.7
38.4
34.2
Minor BPS
47.2
-0.1
2.3
66.83
49.8

Associated Gene:

Gene:
FN1
Ensembl Gene ID:
ENSAPLG00000012652
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013302
8456465 - 8507187
50723