About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_84593_85714_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
84593 - 85714
Intron Length:
1122

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTCTT
5'SS Class:
major
3'SS Sequence:
GTTTTTTCCCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATTAT
U12 Branch Point Sequence:
TCCTCATCAAAT
Flanking Amino Acid:
GNVHSIPSRQDNKAATLTQS
Intron Amino Acid Position:
250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.1
75.6
40
Major BPS
75.9
0.64
1
66.1
40.5
Major PPT
80.1
0.68
0.8
73.8
36.8
Minor 5ss
42.6
-0.8
2.8
59.4
45.1
Minor BPS
50.7
0.1
1.9
70.8
45.5

Associated Gene:

Gene:
CASP10
Ensembl Gene ID:
ENSAPLG00000015244
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015891
80288 - 89355
9068