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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_8459598_8460779_R

Intron Information:

Intron Rank:
41
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8459598 - 8460779
Intron Length:
1182

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTATGAT
U12 Branch Point Sequence:
TTTTCTTTCCCT
Flanking Amino Acid:
LEEVVTVGNTVSEGLNQPAD
Intron Amino Acid Position:
2154

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.8
79.4
28.8
Major BPS
66.9
0.42
1.3
59.7
46.7
Major PPT
85.8
0.81
0.7
77.3
31.4
Minor 5ss
32.1
-2
3.1
36.8
41.9
Minor BPS
47.8
-0
3.6
87.23
39

Associated Gene:

Gene:
FN1
Ensembl Gene ID:
ENSAPLG00000012652
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013302
8456465 - 8507187
50723