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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_8463678_8463885_R

Intron Information:

Intron Rank:
36
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8463678 - 8463885
Intron Length:
208

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGACA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTCACCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
CTTTCCTGCACT
Flanking Amino Acid:
SSPVVIDASTAIDAPSNLRF
Intron Amino Acid Position:
1907

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
74.2
35.8
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
73.1
0.52
0.9
66.9
39.6
Minor 5ss
32.6
-2
3.1
41.2
44.8
Minor BPS
64.8
0.55
2
84.75
41.8

Associated Gene:

Gene:
FN1
Ensembl Gene ID:
ENSAPLG00000012652
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013302
8456465 - 8507187
50723