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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_8464685_8465776_R

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8464685 - 8465776
Intron Length:
1092

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAACTTTC
5'SS Class:
major
3'SS Sequence:
TCTTCTGTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
CTTGTCATAACA
Flanking Amino Acid:
STSAVVSGLMVATKYEVSVY
Intron Amino Acid Position:
1789

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1.1
74.9
36.2
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
80.2
0.68
0.8
73
37.3
Minor 5ss
51.7
0.06
2.5
67
39.3
Minor BPS
59.3
0.29
1.8
71.45
40.9

Associated Gene:

Gene:
FN1
Ensembl Gene ID:
ENSAPLG00000012652
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013302
8456465 - 8507187
50723