About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_8465965_8467817_R

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8465965 - 8467817
Intron Length:
1853

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGCTC
5'SS Class:
major
3'SS Sequence:
CTGATTTCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
CAATCCTGATTT
Flanking Amino Acid:
SLPLTGTQSTAIPPPTNLQF
Intron Amino Acid Position:
1726

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.1
61.3
43.5
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
78.8
0.65
0.9
73.1
37.2
Minor 5ss
33.6
-1.9
3.7
50.1
46.4
Minor BPS
51.9
0.14
1.7
67.03
43.6

Associated Gene:

Gene:
FN1
Ensembl Gene ID:
ENSAPLG00000012652
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013302
8456465 - 8507187
50723