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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_8481971_8485152_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8481971 - 8485152
Intron Length:
3182

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTGTC
5'SS Class:
major
3'SS Sequence:
TTATTTATTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTATTTATTC
Flanking Amino Acid:
SKPLTGEQTTKLDAPTNLRF
Intron Amino Acid Position:
1001

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
73.7
35.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
85.6
0.8
0.8
78.2
39.7
Minor 5ss
39.4
-1.2
3.3
58.2
40.5
Minor BPS
61.2
0.33
1.7
74.93
36

Associated Gene:

Gene:
FN1
Ensembl Gene ID:
ENSAPLG00000012652
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013302
8456465 - 8507187
50723