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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_848238_849576_F

Intron Information:

Intron Rank:
129420
Intron Class:
major
Intron Phase:
Intron Coordinates:
848238 - 849576
Intron Length:
1339

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGCTCA
5'SS Class:
major
3'SS Sequence:
GTCCTTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
CTGACTTTCATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
66.4
35.3
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
84.9
0.79
0.8
79.8
32.1
Minor 5ss
38.8
-1.3
2.9
44.7
44.3
Minor BPS
47.5
-0.3
1.8
50.99
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019604
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044108
847497 - 850257
2761