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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_8487030_8487604_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8487030 - 8487604
Intron Length:
575

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGCCTA
5'SS Class:
major
3'SS Sequence:
TCTCTTGCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACAGAT
U12 Branch Point Sequence:
ATATACAGATAT
Flanking Amino Acid:
SWSRPQAPITGYRIIYTPSV
Intron Amino Acid Position:
845

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69
0.45
1.2
62.7
43.2
Major BPS
66.3
0.41
1
61
37.5
Major PPT
78.6
0.64
0.8
77.2
31.6
Minor 5ss
43.9
-0.7
2.8
56.9
47.3
Minor BPS
40.7
-0.6
2
60.35
41.9

Associated Gene:

Gene:
FN1
Ensembl Gene ID:
ENSAPLG00000012652
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013302
8456465 - 8507187
50723