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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_8487695_8487804_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8487695 - 8487804
Intron Length:
110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTAAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTTAA
U12 Branch Point Sequence:
TTCTCTTAAACA
Flanking Amino Acid:
NLILSTSQTTAPDAPPDHTV
Intron Amino Acid Position:
815

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
77.9
36.9
Major BPS
69.9
0.49
1
61.3
37
Major PPT
76.3
0.59
0.9
73.6
34.7
Minor 5ss
42.4
-0.8
3.1
57.3
47.4
Minor BPS
69.9
0.62
1.6
78.6
38.6

Associated Gene:

Gene:
FN1
Ensembl Gene ID:
ENSAPLG00000012652
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013302
8456465 - 8507187
50723