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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_8493967_8495815_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8493967 - 8495815
Intron Length:
1849

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGATC
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTCAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TCTTTCTCAAAC
Flanking Amino Acid:
WTCIAYSQLRDQCIVDGITY
Intron Amino Acid Position:
522

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
78.8
35.1
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
74
0.54
0.9
70.3
34.1
Minor 5ss
36.9
-1.5
3.3
51.7
45.1
Minor BPS
62
0.35
1.7
71.5
39.6

Associated Gene:

Gene:
FN1
Ensembl Gene ID:
ENSAPLG00000012652
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013302
8456465 - 8507187
50723