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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_8495969_8496811_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8495969 - 8496811
Intron Length:
843

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGACCG
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTCACCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TTCTTCTCACCC
Flanking Amino Acid:
DQKFGFCPMAAHEEICTTND
Intron Amino Acid Position:
471

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
61.7
42.8
Major BPS
85
0.87
0.8
85.6
23
Major PPT
76.9
0.6
0.8
69.8
35.6
Minor 5ss
32.4
-2
3
37.9
40.5
Minor BPS
56
0.17
1.9
69.77
42

Associated Gene:

Gene:
FN1
Ensembl Gene ID:
ENSAPLG00000012652
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013302
8456465 - 8507187
50723