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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_8496989_8498469_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8496989 - 8498469
Intron Length:
1481

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGCTCT
5'SS Class:
major
3'SS Sequence:
CTCTCTTGCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
CTCTCTTGCACA
Flanking Amino Acid:
RRYSFCTEQNVLVQTRGGNS
Intron Amino Acid Position:
412

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
70.2
36.5
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
75.3
0.57
0.9
71
33.3
Minor 5ss
41.2
-1
3
53.8
44.4
Minor BPS
49.6
-0
1.9
63.35
43.5

Associated Gene:

Gene:
FN1
Ensembl Gene ID:
ENSAPLG00000012652
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013302
8456465 - 8507187
50723