Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_8499321_8500325_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8499321 - 8500325

Intron Length:

1005

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGTGGG

5'SS Class:

strong_major

3'SS Sequence:

TGTTCTCCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTGCAC

U12 Branch Point Sequence:

GATGTCTCACCT

Flanking Amino Acid:

RHTSLHTTSTGSGSPSFTNV

Intron Amino Acid Position:

285

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.4

0.83

0.9

68.8

42.2

Major BPS

65.1

0.38

1.4

77.4

37.4

Major PPT

83.6

0.76

0.8

77.8

Minor 5ss

32.2

-2

3.1

37.3

42.5

Minor BPS

47.7

-0

1.9

65.67

44.7

Associated Gene:

Gene:

FN1

Ensembl Gene ID:

ENSAPLG00000012652

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013302

8456465 - 8507187

50723