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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_8505212_8506673_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8505212 - 8506673
Intron Length:
1462

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGTTGG
5'SS Class:
major
3'SS Sequence:
TCTCCCCTTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
GTTTCATGAAGT
Flanking Amino Acid:
RGFNCESKPEPEETCFDKYT
Intron Amino Acid Position:
96

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1.3
69.7
43.7
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
78.8
0.65
0.7
73.5
24.7
Minor 5ss
41
-1
2.8
48.5
41.1
Minor BPS
55.7
0.26
2
79.31
42.1

Associated Gene:

Gene:
FN1
Ensembl Gene ID:
ENSAPLG00000012652
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013302
8456465 - 8507187
50723