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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_8506803_8507030_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8506803 - 8507030
Intron Length:
228

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGC|GTGAGTACC
5'SS Class:
major
3'SS Sequence:
CTTCTCTCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CGCTGAT
U12 Branch Point Sequence:
TGATGGGAAACT
Flanking Amino Acid:
QAQANPPQGKQTCFDNGRYY
Intron Amino Acid Position:
53

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.9
0.38
1.3
65.8
40.2
Major BPS
63.8
0.34
1.2
54.7
43.1
Major PPT
80.7
0.69
0.7
73
31.8
Minor 5ss
32.5
-2
2.6
33.8
33.9
Minor BPS
36.8
-0.9
2.8
60.91
48.4

Associated Gene:

Gene:
FN1
Ensembl Gene ID:
ENSAPLG00000012652
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013302
8456465 - 8507187
50723