Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_8572947_8579087_F

Intron Information:

Intron Rank:

127606

Intron Class:

major

Intron Phase:

Intron Coordinates:

8572947 - 8579087

Intron Length:

6141

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAAGTGGC

5'SS Class:

strong_major

3'SS Sequence:

TAAATAACTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCTAAA

U12 Branch Point Sequence:

TTTTCCTAAATA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.6

0.82

71.1

40.4

Major BPS

72.7

0.57

72.1

31.1

Major PPT

61.8

0.27

57.4

42.8

Minor 5ss

32.6

-2

3.1

35.3

41.4

Minor BPS

0.87

1.5

87.11

31.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000018792

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030472

8572848 - 8580010

7163