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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_85787_86223_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
85787 - 86223
Intron Length:
437

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGACTT
5'SS Class:
strong_major
3'SS Sequence:
GCTTTATGTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTTTAT
U12 Branch Point Sequence:
TTTGCTTTATGT
Flanking Amino Acid:
SIRSVSSNVNDHYAEEPRSL
Intron Amino Acid Position:
226

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
77.2
37.6
Major BPS
66.1
0.4
1.3
59.6
46.8
Major PPT
74.8
0.56
1
68.7
41.2
Minor 5ss
38
-1.3
3.3
54.4
43.7
Minor BPS
56.4
0.28
2
79.06
43.7

Associated Gene:

Gene:
CASP10
Ensembl Gene ID:
ENSAPLG00000015244
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015891
80288 - 89355
9068