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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_8624257_8625908_F

Intron Information:

Intron Rank:
145104
Intron Class:
major
Intron Phase:
Intron Coordinates:
8624257 - 8625908
Intron Length:
1652

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGATGG
5'SS Class:
major
3'SS Sequence:
GGACTTTCTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
CCTTTCTTAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
63.4
43.8
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
71.7
0.49
1
62
44.2
Minor 5ss
35.9
-1.6
3.3
47.1
48.3
Minor BPS
70
0.49
1.4
66.07
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028272
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047480
8623633 - 8627027
3395