Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_8626009_8626605_F

Intron Information:

Intron Rank:

145105

Intron Class:

major

Intron Phase:

Intron Coordinates:

8626009 - 8626605

Intron Length:

597

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

AAG|GCACGTTTG

5'SS Class:

strong_major

3'SS Sequence:

TTATTTGTTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

TCATTTTTAAAT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.9

0.94

0.9

73.6

43.1

Major BPS

90.4

0.7

90.2

19.3

Major PPT

82.1

0.72

0.9

81.4

36.1

Minor 5ss

32.4

-2

4.1

48.8

47.4

Minor BPS

67.4

0.63

1.3

77.29

39.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028272

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047480

8623633 - 8627027

3395