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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_8638356_8639504_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8638356 - 8639504
Intron Length:
1149

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGCTGA
5'SS Class:
strong_major
3'SS Sequence:
GTCTCCTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
CTTTCTCTAACG
Flanking Amino Acid:
SRWKHILEDLGFQKEADSLL
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.9
75
38.1
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
74.2
0.55
0.8
65.5
36.1
Minor 5ss
43.2
-0.7
2.9
56.2
47.9
Minor BPS
65.2
0.34
1.8
71.75
41.4

Associated Gene:

Gene:
MREG
Ensembl Gene ID:
ENSAPLG00000012631
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013142
8635642 - 8647102
11461