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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_8639596_8644687_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8639596 - 8644687
Intron Length:
5092

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGACG
5'SS Class:
strong_major
3'SS Sequence:
CTTTGCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
CATGTTTTATCT
Flanking Amino Acid:
GRSQLDKDSEEWQKLNYDIY
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
72.1
39.1
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
86.2
0.81
0.8
80.4
31.5
Minor 5ss
27.1
-2.6
2.9
31.3
42.6
Minor BPS
51.9
0.14
1.7
67.74
43.7

Associated Gene:

Gene:
MREG
Ensembl Gene ID:
ENSAPLG00000012631
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013142
8635642 - 8647102
11461