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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_8650254_8650470_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8650254 - 8650470
Intron Length:
217

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTACC
5'SS Class:
major
3'SS Sequence:
CCCCCATCCCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTGAT
U12 Branch Point Sequence:
TGTGATATATTC
Flanking Amino Acid:
AAPSPPNVSYLVCPAEELPF
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1.1
72.2
37.5
Major BPS
68.9
0.47
1.2
60.7
45.9
Major PPT
62.6
0.28
0.8
53.8
29.7
Minor 5ss
39.9
-1.1
2.8
57.3
39.7
Minor BPS
41.7
-0.6
1.9
52.6
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012593
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013109
8649751 - 8651800
2050