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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_8650685_8651003_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8650685 - 8651003
Intron Length:
319

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGGAT
5'SS Class:
strong_major
3'SS Sequence:
TCTGTCTCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TGTTTATTATCT
Flanking Amino Acid:
SEKLTQIFRETWGQLLKYSH
Intron Amino Acid Position:
163

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.8
78.2
31.2
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
78.2
0.64
0.8
72.3
32.5
Minor 5ss
25.4
-2.8
3.5
36.8
47.7
Minor BPS
60.7
0.41
1.9
81.71
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012593
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013109
8649751 - 8651800
2050