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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_8680878_8705493_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8680878 - 8705493
Intron Length:
24616

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTATC
5'SS Class:
strong_major
3'SS Sequence:
GGTTCTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTAAT
U12 Branch Point Sequence:
AACCCTGTAATG
Flanking Amino Acid:
IEVPDAYNMVDLLNFDDPLN
Intron Amino Acid Position:
63

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.8
83.1
28.6
Major BPS
72.1
0.55
1.2
73.3
39.1
Major PPT
82
0.72
0.9
73.1
42.1
Minor 5ss
35
-1.7
2.8
42.6
38.5
Minor BPS
45.8
-0.4
2
47.84
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004341
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004457
8672186 - 8705577
33392