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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_8728578_8730696_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8728578 - 8730696
Intron Length:
2119

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
GTCTGTGTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACGAAG
U12 Branch Point Sequence:
GTGCCCCTGTCT
Flanking Amino Acid:
RLWCDWDETMGTYGELTNCT
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
1
75.2
36.3
Major BPS
40.3
-0.6
1.6
45
36.7
Major PPT
75.3
0.57
1
68.5
42.1
Minor 5ss
33.5
-1.9
3.1
36.8
40.4
Minor BPS
39.1
-0.7
3.5
66.46
44

Associated Gene:

Gene:
RAMP1
Ensembl Gene ID:
ENSAPLG00000004363
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004479
8728322 - 8730970
2649