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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_8730895_8730968_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
8730895 - 8730968
Intron Length:
74

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TGGCTTACCTGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATGGCTTACCT
Flanking Amino Acid:
IGRRVPNLAQ
Intron Amino Acid Position:
1

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
82.2
25.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
49
-0
1.7
58.9
41.8
Minor 5ss
40.8
-1
3
53.7
43.8
Minor BPS
53.8
0.2
2.2
76.7
45.7

Associated Gene:

Gene:
RAMP1
Ensembl Gene ID:
ENSAPLG00000004363
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004479
8728322 - 8730970
2649