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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_8739572_8739697_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8739572 - 8739697
Intron Length:
126

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGTA
5'SS Class:
strong_major
3'SS Sequence:
GTTATTCCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTTAT
U12 Branch Point Sequence:
ATTTCTGTTATT
Flanking Amino Acid:
KLQEIHPEASRDKIVDALLE
Intron Amino Acid Position:
779

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.8
80.3
26.9
Major BPS
69
0.47
1.2
61.1
45.5
Major PPT
80.3
0.68
0.9
73.3
37.1
Minor 5ss
28.6
-2.5
3.4
37.8
47
Minor BPS
50.7
0.1
2.3
77.55
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024288
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032806
8739418 - 8747575
8158