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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_8765277_8766985_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8765277 - 8766985
Intron Length:
1709

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
AATGGTCTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
GTCCCTTCAACT
Flanking Amino Acid:
ALKTAGDGMLGKTNEVDMKN
Intron Amino Acid Position:
233

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.5
1.1
0.7
87.9
25.6
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
67.8
0.4
1
63.3
43.2
Minor 5ss
35.3
-1.7
3.2
50.4
46
Minor BPS
60.9
0.42
1.6
74.55
42.1

Associated Gene:

Gene:
LRRFIP1
Ensembl Gene ID:
ENSAPLG00000004640
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028671
8762950 - 8813833
50884