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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_8774465_8807456_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8774465 - 8807456
Intron Length:
32992

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGTGCG
5'SS Class:
strong_major
3'SS Sequence:
CTCTGTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TATTATCTAACG
Flanking Amino Acid:
MKELERQQKEIEERPEKDFE
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
1
69.9
40.9
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
84.7
0.78
0.8
78.9
33.2
Minor 5ss
31.9
-2.1
3.3
41.4
45.1
Minor BPS
55.2
0.02
1.9
66.55
40.7

Associated Gene:

Gene:
LRRFIP1
Ensembl Gene ID:
ENSAPLG00000004640
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028671
8762950 - 8813833
50884