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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_8863683_8863785_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8863683 - 8863785
Intron Length:
103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
TGTCTCTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GACAGAA
U12 Branch Point Sequence:
AGCTCTAGGAGC
Flanking Amino Acid:
ALLVYDITNKETLGRAKQWL
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
63.9
42.4
Major BPS
45.8
-0.2
1.1
38.7
32.4
Major PPT
77.8
0.63
0.8
69.6
36.7
Minor 5ss
23.2
-3.1
3.2
28.7
43.7
Minor BPS
40.4
-0.7
1.8
46.04
36.6

Associated Gene:

Gene:
RAB17
Ensembl Gene ID:
ENSAPLG00000004880
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005039
8863149 - 8868296
5148